PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj6g3v0959410.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family SRS
Protein Properties Length: 390aa    MW: 41128.7 Da    PI: 8.4096
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj6g3v0959410.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702211.12.8e-651783413154
           DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel..kskkqsalsstklssa 94 
                       gta+CqdCGnqakkdC h+RCR CCksrgfdC thvkstWvpaa+rrerq +++ a++  ++++++ ++k++r    ++++++++s+t++s++
  Lj6g3v0959410.1 178 GGTATCQDCGNQAKKDCGHRRCRSCCKSRGFDCPTHVKSTWVPAARRRERQVMAERAAAAGSSASTSGHAKKPRLVasQTTTTTTTSHTSTSNT 271
                      5889***********************************************9999998888888899999999987445666777889999999 PP

           DUF702  95 eskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                      ++++++etss          lP++v+++avf+cvrv++vd ge+e+aYq+ v+igGh+fkG+Ly+qG+e+
  Lj6g3v0959410.1 272 TPPRSFETSSshqdvsfkesLPRQVRAPAVFKCVRVTAVDGGEDEFAYQAMVKIGGHLFKGLLYNQGVEN 341
                      *******9999********************************************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051427.4E-60180340IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016234.1E-26182224IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016246.7E-26292339IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0048364Biological Processroot development
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MEKMMKREQI YQTPSVVATT RRLPSDSGGA FADWSATPPS SSAAATIPGH ASDLSLGFNA  60
ASAGMWPGAS SARPISYSHV ASDMVGLRDV FLVAPASSFN HHSESLMPDP HLNSSNNPVT  120
ALGVGMIPLL GGGIQLWHDQ QQQQQHEQNY LKKHALVEHD NGDGGGGGIT ALVATSGGGT  180
ATCQDCGNQA KKDCGHRRCR SCCKSRGFDC PTHVKSTWVP AARRRERQVM AERAAAAGSS  240
ASTSGHAKKP RLVASQTTTT TTTSHTSTSN TTPPRSFETS SSHQDVSFKE SLPRQVRAPA  300
VFKCVRVTAV DGGEDEFAYQ AMVKIGGHLF KGLLYNQGVE NRDGYPDLSE LHLGGRNGVS  360
SSSPMMNPSF DVYVASGSGG FLGGSSTYGN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014502940.11e-121PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like, partial
SwissprotQ94CK92e-87LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBLV7B6F11e-112V7B6F1_PHAVU; Uncharacterized protein
STRINGGLYMA02G44860.21e-106(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65043351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.42e-93Lateral root primordium (LRP) protein-related